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Honey bee waggle dance data and code to analyze the spatial foraging patterns of co-localized colonies in Virginia as part of Bees-as-Bioindicators project.

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posted on 2025-05-06, 19:20 authored by Bradley OhlingerBradley Ohlinger, Margaret CouvillonMargaret Couvillon, Laurence Carstensen, Roger SchuerchRoger Schuerch

Optimal foraging theory (OFT) predicts that animals employ foraging strategies that maximize a particular currency, such as net energetic efficiency, to meet their nutritional demands. Two non-exclusive patterns that arise from OFT are convergence on high-quality resources and resource partitioning. Honey bees make collective decisions by integrating their individual foraging with social recruitment behaviors: returning foragers communicate the approximate vector to high-quality resources using waggle dances. Because we can eavesdrop on their communications, waggle dance decoding is a valuable tool for exploring OFT predictions as it allows us to map how honey bees use landscapes. In this study, we analyzed 8049 dances from co-localized colonies across three landscapes to investigate whether neighboring colonies forage by not partitioning patches (i.e. converging their food collection on the same patches), by partitioning at the landscape level, or by partitioning at the local level. To differentiate between these three possible scenarios, we examined three metrics: (1) inter-dance distances between and within colonies; (2) k-nearest neighbors; and (3) k-means clustering. We observed no difference in the distances between dances performed by bees from the same colony compared to those from different colonies. Also, we found at each of the three field sites that dances from the same colony were not more likely to appear as close neighbors to each other. Finally, k-means cluster analysis demonstrates that dance locations advertised by the same colony aggregated non-randomly in the three sites, where dances from the same colony comprised a significant majority of dances within k-means clusters and 62% of clusters consisted entirely of dances from a single colony. Together, these results support a foraging scenario where honey bees partition their foraging, but at the local level. This strategy may help limit inter-colony foraging competition.

Funding

Foundation for Food and Agriculture Research (Grant #549044 to PI MJ Couvillon and co-PI R Schürch)

National Institute of Food and Agriculture (Grant # VA-160097 to MJ Couvillon)

National Institute of Food and Agriculture (Grant # VA-160129 to R Schürch)

History

Publisher

University Libraries, Virginia Tech

Location

Blacksburg, Virginia, United States.

Corresponding Author Name

Bradley Ohlinger

Corresponding Author E-mail Address

bradley.ohlinger@uga.edu

Files/Folders in Dataset and Description

foraging_cluster_analysis.zip – ZIP archive containing all necessary files to reproduce the analysis in the manuscript csv/ - folder containing comma separated value files with data and results of statistical analyses csv/bb_points.csv – Comma separated value file containing the dances analyzed from the PFRC field site in Blacksburg, VA csv/btw_df.csv – Comma separated values file containing point estimates and confidence intervals for the between colony inter-dance distance at all three sites csv/clust_size_ci.csv – Comma separated values file containing point estimates and confidence intervals for the maximum within-cluster distance (cluster size) at all three sites csv/dance_agg_data.csv – Comma separated values file containing the mean decoded waggle phase duration and angles for each dance and relevant metadata. csv/dance_data.csv – Comma separated values file containing decoded dance data (four waggle phases per dance) for the full dataset csv/diff_df.csv – Comma separated values file containing point estimates and confidence intervals for the between- and within-colony inter-dance distance differences at all three sites csv/inter_clust_size_ci.csv – Comma separated values file containing point estimates and confidence intervals for the minimum inter-cluster distance at all three sites csv/max_prop_ci.csv – Comma separated values file containing point estimates and confidence intervals for the clustering values at all three sites csv/nn_prop_ci_df.csv – Comma separated values file containing point estimates and confidence intervals for the neighboring values at all three sites. csv/nn_ratio_ci_df.csv – Comma separated values file containing point estimates and confidence intervals for the neighboring ratios at all three sites csv/prop_clust_terr_ci.csv – Comma separated values file containing point estimates and confidence intervals for the proportion single-colony clusters at all three sites csv/prop_hive_terr_ci.csv – Comma separated values file containing point estimates and confidence intervals for the proportion territorial colonies at all three sites csv/size_diff_ci.csv – Comma separated values file containing point estimates and confidence intervals for the difference between the cluster sizes and inter-cluster distances csv/tw_points.csv – Comma separated value file containing the dances analyzed from the TAREC field site in Tidewater, VA csv/win_points.csv – Comma separated value file containing the dances analyzed from the WAREC field site in Winchester, VA csv/within_df.csv – Comma separated values file containing point estimates and confidence intervals for the within-colony inter-dance distance at all three sites figures/ - folder containing all figures included in the manuscript figures/figure_1.png – Schematic summarizing the study setup, data collection, and data analysis. figures/figure_2.png – Diagram showing three scenarios for the spatial distribution of dance locations advertised by co-localized colonies figures/figure_3.png –  Figure showing point estimates and 95% confidence intervals for the between- (black points) and within-colony (white points) inter-dance distances at all three sites figures/figure_4.png – Figure showing point estimates and 95% confidence intervals for the neighboring ratio values at all three sites figures/figure_5.png – Figure showing point estimates and 95% confidence intervals for both the clustering values (A) and proportion single-colony clusters (B) at all three sites figures/figure_6.png – Figure showing point estimates and 95% confidence intervals for the cluster size (black points) and the inter-cluster distance (white points) at all three sites figures/figure_7.png – Dance communicated foraging heat maps showing representative examples of the different foraging scenarios at the PFRC site. images/ – Folder containing JPEG files showing daily foraging heat maps at PFRC (134 files/maps). Each JPEG filename indicates the date of the foraging day depicted in the map. points/ - folder containing Rdata files that consist of points that represent simulated dance locations points/Allsample.blacksburg_points.RData – R data file consisting of points that represent the simulated dance locations for the PFRC field site in Blacksburg, VA points/Allsample.tidewater_points.RData – R data file consisting of points that represent the simulated dance locations for the TAREC field site in Tidewater, VA points/Allsample.winchester_points.RData – R data file consisting of points that represent the simulated dance locations for the WAREC field site in Winchester, VA scripts/ - folder containing R scripts for the analysis. The scripts should be run in same sequence as listed below. scripts/00_system_prep.R – R script with code that prepares the system for analysis scripts/01_dance_data_prep.R - R script with code that prepares decoded waggle dance data for the preliminary analysis scripts/02_analysis_prep.R - R script preparing the decoded and simulated waggle dance data for the primary analysis scripts/03_analysis.R – R script containing the inter-dance distance, k-nearest neighbor, and k-mean cluster analyses scripts/04_figures.rmd - RMarkdown file containing code that creates figures 3-6 scripts/05_daily_maps – R script with code that generates daily waggle dance communicated foraging heat maps at the PFRC site scripts/azimuth.R – R script with code that calculates solar azimuths for dance decoding shapefiles/ – Folder containing a shapefile for a study area map and its supporting files shapefiles/study_area_2250km.cpg – Supporting file for study_area_2250km.shp shapefiles/study_area_2250km.dbf – Supporting file for study_area_2250km.shp shapefiles/study_area_2250km.prj – Supporting file for study_area_2250km.shp shapefiles/study_area_2250km.sbn – Supporting file for study_area_2250km.shp shapefiles/study_area_2250km.sbx – Supporting file for study_area_2250km.shp shapefiles/study_area_2250km.shp – Shapefile showing the 2250 km radius study area surrounding the experimental colonies at PFRC shapefiles/study_area_2250km.shp.xml – Supporting file for study_area_2250km.shp shapefiles/study_area_2250km.shx – Supporting file for study_area_2250km.shp

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