.GZ

HOFI_PairwiseTransmission_LB9764_R2.fastq.gz (130.59 MB)

.GZ

HOFI_PairwiseTransmission_LB9764_R1.fastq.gz (1.42 GB)

DATASET

HOFI_PairwiseTransmission_LB_9764_metadata.csv (25.08 kB)

DOCUMENT

ReadMe_HOFI_PairwiseTransmission.rtf (20.03 kB)

DOCUMENT

README.rtf (1.95 kB)

1/0

5 files

Data associated with Gregory et al. "The house finch ocular microbiome is altered by infection, but does not predict disease transmission"

dataset

posted on 2024-07-23, 16:14 authored by Lisa BeldenLisa Belden, Dana HawleyDana Hawley, Casey GregoryCasey Gregory, Sara TeemerSara Teemer, Chava WeitzmanChava Weitzman, Anna Perez-UmphreyAnna Perez-Umphrey

This is bacterial 16S rRNA gene amplicon data and metadata; it includes amplicon sequences, sequencing information necessary for demultiplexing and using the amplicon data, house finch eye scores, and Mycoplasma gallisepticum (MG) qPCR data. These data are associated with the study by Gregory et al., "The house finch ocular microbiome is altered by infection, but does not predict disease transmission"

Funding

National Science Foundation IOS grant 1755051

History

Publisher

University Libraries, Virginia Tech

Location

Virginia Tech, Blacksburg, Virginia, USA

Corresponding Author Name

Lisa Belden

Corresponding Author E-mail Address

belden@vt.edu

Files/Folders in Dataset and Description

[HOFI_PairwiseTransmission_LB9764_R1.fastq.gz]- forward (R1) bacterial 16S rRNA gene amplicon reads [HOFI_PairwiseTransmission_LB9764_R2.fastq.gz]- barcode (R2) bacterial 16S rRNA gene amplicon reads [HOFI_PairwiseTranmission_LB_9764_metadata.csv]- includes all sample-associated metadata, including sequencing barcodes, and eye score and MG qPCR data used in study. [ReadMe_HOFI_PairwiseTransmission]- provides details of data columns in the HOFI_PairwiseTransmission_LB_9764_metadata.csv file

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Keywords

house finch (Haemorhous mexicanus)Mycoplasma gallisepticum ocular microbiome

Licence

CC0 1.0 Universal (CC0 1.0) Public Domain Dedication

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